PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00920.1_g00018.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 323aa    MW: 35523.7 Da    PI: 8.019
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00920.1_g00018.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH47.23.6e-15237261226
                              -S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                              ktelC+ +++tGtC+yGd C+FaHg
  Rsa1.0_00920.1_g00018.1 237 KTELCNKWQETGTCPYGDHCQFAHG 261
                              9***********************8 PP

2zf-CCCH21.25.1e-07274299126
                              --S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                              ykte Cr  +++ +C+yG rC+F H+
  Rsa1.0_00920.1_g00018.1 274 YKTEVCRMVLAGDICPYGHRCHFRHS 299
                              9**********55**********998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.1E-18230268IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-11232267IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-9235262IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.23235263IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-12237261IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.9E-13269302IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-9269304IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.272273301IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-5273300IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MENETAPFTY SVITSHGEPS VGGGGGGVVN QIYRTSSAMQ QQRRQDMVNR EALCYTRLHE  60
ASLEAEVLRL ENTELRSMNL HLKRELDELI RSSVQNSRHR FGYDRVPLRM LSNLSIGDRG  120
GAEADDDAEN RNRAVSRDDV SEESPTSVIA NEDLNRSSLP KSISVRSSGY SKASQGGGGC  180
GGGGSAAAQC GKSRGVVAKP GACGQQLSTT QRVYVRGGKK EEEEEIEVEV YNQGMTKTEL  240
CNKWQETGTC PYGDHCQFAH GIKELRPVIR HPRYKTEVCR MVLAGDICPY GHRCHFRHSL  300
SEQEKLVASA GCKPNNKSCK LVK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A2e-22237302570Butyrate response factor 2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00383ampDAPTransfer from AT1G68200Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894891e-142AC189489.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB084K02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009105366.11e-179PREDICTED: zinc finger CCCH domain-containing protein 15
SwissprotQ9C9F51e-139C3H15_ARATH; Zinc finger CCCH domain-containing protein 15
TrEMBLM4CJA41e-179M4CJA4_BRARP; Uncharacterized protein
STRINGBra004288.1-P1e-178(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72872339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.11e-124C3H family protein